EM-Connectomics¶

TODO: add a summary table

SNEMI3D: Segmentation¶

Description
- resolution: 6x6x30 nm
- train: 6x6x3 um (AC4 in Kasthuri dataset)
  image/train-input.tif, seg/train-labels.tif
- test: 6x6x3 um (first 100 slices in AC3 in Kasthuri dataset)
  image/test-input.tif
Download
- snemi website (register first)
- Rhoana copy
- RC server copy: /n/coxfs01/vcg_connectomics/snemi/
- valid: 6x6x4 um (last 156 slices in AC3 in Kasthuri dataset)

CREMI: Segmentation+Synapse¶

Description
- resolution: 4x4x40 nm
- train: 5x5x5 um
  orig/sample_{A,B,C}_20160501.hdf
- test: 5x5x5 um
  orig/sample_{A,B,C}+_20160601.hdf
- correction:
  shift re-alignment all volumes
  
  {A,B,C}: crop the intersecting regions
  
  A+: fix the crack
Download
- cremi website
- Rhoana copy (corrected)
- RC server (corrected): /n/coxfs01/vcg_connectomics/cremi/

LUCCHI: Mitochondria¶

Description
- resolution: 5x5x5 nm
- train: 5x4x1 um
  train_im.tif, train_label.tif
- test: 5x5x5 um
  test_im.tif, test_label.tif
Download
- lucchi website
- Rhoana copy
- RC server (corrected): /n/coxfs01/vcg_connectomics/mitochondria/Lucchi/